#!/bin/bash

dir=`pwd`

rm $dir/ALL_Protomers

for i in `cat FINISHED`;

do

cd ${i}_build

grep "REAL3" ${i}.xls >> $dir/ALL_Protomers

cd $dir

done

awk '{print $2}' $dir/ALL_Protomers | sort -u > PROTOMERS-uniq

awk '$5==0' $dir/ALL_Protomers > PROTOMERS-neutral

awk '$5==-1' $dir/ALL_Protomers > PROTOMERS-mon-anion

awk '$5<=-2' $dir/ALL_Protomers > PROTOMERS-mult-anion